Scaffold JGI12270J11330_10000783

Overview

Basic Information

• Taxon OID: 3300000567
• Scaffold ID: JGI12270J11330_10000783
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - SII-2010
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 24186
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.13
  • Long. (^o): 11.88

Associated Families

Family	Category	Number of Sequences	3D Structure?
F104586	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
JGI12270J11330_100007835	F104586	GGA	MKVTLYNCVGSSGGPIQSTFCISSIHRYFTPGRNLALACFLLTHQLPGASHATPNSSPIRVASDFPGADVGEQINAAYADLPEQGGQITLTAGGSFSKPIVFGTNNKPVLLIGVPGDVVNLIYTGTIGTAITFDYGTGHRMGHGLRDVTLTGPGDATDTVGVRFGGSNGAEGITFRDFKIQSFGRNLEMGSHTWLAYFEHGLIRNGGVNVLLPAGLAQAGEQIVFNHVTFADAPPPHLNSVWIQGGGQEVIFRDCSFDQAQLRIGDGGQAAAQVVVSGSHFENSNYMLAGSVNYDYVTVDNHSGNLLRITDSYFLQDAPSNGPSRFLMVNGGTVFLCGVGMYTPAGSPMQHFATLAKTATIDAYGFSDLSGYITGSPFGY*